Just wanted to throw out there that it looks to me (anecdotally) that most ppl are experiencing the lag first in Whiterun, then it "spreads" to other aspects of the game, or that the word Whiterun seems to be commonly associated with posts dealing with lag.
Is it possible there's some unholy alliance between save size and the code for Whiterun that's triggering the FPS/lag issue? Thoughts, anyone? Am I accurate here?
