I believe this has to do with the random spawn code. Sometimes they just spawn in the air. After that the physics package takes over.
I think so too, though it must be a glitch that they spawn in the air. This actually happened to my character - I made a save somewhere in the Forgotten Vale, and when I reloaded, my character spawned in the air and fell to the ground, almost dying (thankfully she had fairly high health). Thinking it was some bizarre one-off incident, I reloaded and tried several times, and each time it happened again.