Does the draugr have the master ambush script? ( I would assume so if it was pulled from the warehouse).
Is the draugr link ref'd to the sarcophagus? I asume you have also looked at the tutorial in the CK wiki. I'd also go over a vanilla set like Bleak Falls Barrow with a fine tooth comb to se what is up.
Thanks, but, yes, I'm certain that everything about them is correct. I have made no attempt to modify the warehouse ambushes. This problem only started to occur recently, like in the last month or two. I had ambushes of all kinds (centurions, Falmer, and chaurus as well) and they worked like a charm on multiple dungeon tests (even with dirty saves). Now NONE of them are working 100% of the time, even on a save made with no mods activated.