Im not going to name the mod.
Unfortunatly I ctd when i get near any area this mod edits. (when the mod is disabled my game is ctd free)
Ive had some correspondance with the author pointing out the deleted references. Their reply was that
"Depending on load order, if another mod is referring to a deleted item it will either override and put it back, or not, depending on which mod is loaded first" The author did clarify that deleting major elements such as quest triggers or linked refs would be bad.
So im a bit at loss as to what is correct ? the author or the long held view that deleting stuff is bad. Has skyrim fixed the deleted ref problem and its no longer an issue. (in which case i need to search elsewhere for my ctd issue)
Hoping one of the experienced hands could chime in and provide a reasonably definitive answer that I could take back to the author.