Freezing = turn off auto-saves.
Darkness... um Candlight (while in Skyrim or Solstheim) worked as a permanent dispel for me. Otherwise maybe try reading the book again and then reding it again to leave while NOT in shadows?
Gonna try that fix. I'll have to remember to save more often though.
Anyway, I tried candlelight. I thought it was leftover sound because I cheated in Apocrypha and used candlelight to speed right through the whole thing (since the darkness doesn't hurt if candlelight is pushing it away), but it's possible that it might just be leftover sound from when I first stepped into the darkness and got hurt. I don't think it went away after that. Either way, reloading an autosave fixed mine. A normal save should work too, if it's new enough.