While I agree that the guild quests were too short, I prefer the Skyrim guild stories over Oblivion's. Oblivion's guild had some of the worst, and most annoying, themes ever.
I hated the Robdin hood thieves guild
I hates the blood cultists DB
I hated the overly white kniht fighters guild
and I hated the dumb as doornails mages guild.
I can safely say that, besides the Gey Fox, who I only marginally liked, Oblivion's guilds were some of the worst, and most annoying, characters, ever.
Skyrim's guilds were far better in terms of overall plot, and characters.
Skyrim has good idea, but bad implimentation, while Oblivion had terrible ideas, but good implimentation.