This was a problem, because he still showed up as a red dot on my radar-dealie. Not only that, but he still showed up as a living NPC to my allies. They kept shooting arrows and trying to stab him, and would not stop.
I was able to stop the madness by console killing him... Which is itself weird since, again, he was already dead and I looted him before using the console. I dont have a question or anything. So long as the console keeps working, It wont be a problem. But its weird enough that it got my attention.
Also I have the unofficial skyrim patch installed, but nothing besides that.