I can't believe I have taken this long to figure this out:
Morrowind is a perfect example of different skill trees we have forgotten.
Houses (Redoran etc.)
Temple Skill Tree
ALSO
For RP reasons I also think it might be cool to have something like a Grand Inquisitor Skill Tree (like from Cyrodil, Imperials) (picture half rogue, half fighter abilities)
Dwemer Skill Tree (could be several - one could involve using Dwemer Constructs - another could involve using Dwemer Crafting or Spells)
Ayleid Skill Tree (Spells or some ancient lore, or a tree for fighter/mages)
What do you guys think? Feel free to add more!