Again, I already have the scroll and Septimus Signus is long dead due to Oghma quest. Am I screwed when I Reach the Elder Knowledge main quest, where you supposedly need to speak to Septimus? That is my only concern. Has anyone experienced this specific set of circumstances, and then reached the Elder Knowledge main quest? If so, were you able to complete Elder Knowledge? Anything I should know?
The only requirement for Elder Knowledge is having the Elder Scroll.
Yes, what Lord Vukodlak said. I personally went through this on my second character, who decided to do the Daedric quests first, and therefor did the quest for Septimus (resulting in his death) loooong before that part of the main quest.
What will change - when Parthuurnax tells you about using the Elder Scroll at the time rift, you simply get a dialog option along the lines of "Dude! I already got it right here, yo!" and that is that. You go straight to using the scroll.
It does not break anything, it simply allows you to skip the trips to talk to this person and that person and read that book and this book and all that.
In fact, doing it in that order is now my preferred method. More efficient and I get the Oghma earlier. Win!