Are you wearing NCR or Powder ganger armor?
No, and I tried taking off all of my armor and entering town just in case I'd repaired my armor with faction armor, but it didn't change anything. I think it has something to do with http://planetfallout.gamespy.com/mods/515/The-NCR I deleted the .esp from my load order and my directory, but I'm still having the problem... Do you know if I'm fully uninstalling it? Because there's no uninstallation directions in the read-me or the description.
Edit: Yeah, it's definitely that mod. I loaded a save from before I joined the NCR in the mod, and they didn't attack me.