Can you see it as completed then in the quest log? Like I said, for me the (Optional) part was still incomplete even though I had shown Hardin the mission tapes earlier. That first time was right after finding all three, before I got the step from McNamara to go fetch the scout reports.
You did agree to help Hardin when he asked for it early on, right?
Yes I did and I haven't gotten that objective at all. And I know nothing about any filtration system. I agreed to help, agreed to kick him out, got the tapes, purged the virus, accessed the chain of command thing, told Hardin about it and the second clause and in that order.