I also sided with the Legion as early as I could in my last playthrough and I wouldn't worry. Like TES_Ronin says, even though there are many NCR quests, there's still *plenty* of things to do outside of that.
One thing though, when the Rangers come and start warning you (they'll warn you that you need to improve your relations with the NCR in a few days otherwise they'll kill ya)... Well, make sure that you're prepared for that fight because they are pretty [censored] tough at earlier levels. I found them tougher than the Legion assassins.
I killed all of them, after each visit. They tried to run, but I VATS-ed them with my melee weapon before they could escape. And then the same arrogant woman returns to warn me every time, like the NCR has a whole clone army of the same chick. When they finally dropped the hammer, I'd already killed the same squad 3 times over, so it wasn't a huge surprise.
I agree, however, that if they attack before you level up or take the right perks, you're screwed. I was saved by Super Slam in a couple of those encounters.