Without telling me where the secret rooms are, how hard are they to find? I'm pretty sure I'm skipping over them, but I'm not really looking for them. Also, how about the field goals? I briefly looked for them but I didn't find anything resembling goal posts.
The id room is quite easy to find; regular nosing around and looking a little bit for stuff will get you that.
The Quake room is findable - the buttons you need to press for it are well tucked away but some more intensive searching can turn them up. It's location is also well hinted.
Unless I've missed something I'd say the Doom and Wolf rooms are impossible unless you've been spoilered. No hints at all that I could find. Once you have been spoilered they're utterly trivial though. You've probably missed the Wolf room by this point in time though as it's very early in the game.