"Under the FAQS it says: Can some one tell me how to stop these weapons from being distributed throughout skyrim?
-do you use the JSWordsDistribution Plugin? if not use it if you want distributed weapons"
This confuses me as he seems to be answering how to get them to be distributed. I'm not really familiar with the difference between mods and plugins but if I uncheck the JSwords.esm in NMM will that stop the swords from appearing but still allow me to craft any of them, if I have the necessary skill? It won't break the rest of the mod?
I would have asked this in the Mod forum for the specific mod but it seems dead there...

If you don't want the swords distributed throughout Skyrim, simply do NOT use the JSwordsDistributionBalancePlugin.esp file. That's it