I didn't choose intense flames simply because I didn't want to chase down enemies. If I wanna chase something, I go deer hunting. Besides, with flames causing damage after the strike, I don't see it getting enough use to justify the perk point. However, if you've perked your Illusion tree at all, Aspect of Terror adds to your fire spell damage - that might be an alternative.
Disintegrate leaves little ash piles everywhere which, AFAIK, never clean up, meaning they'll be in your game forever (unlike regular corpses). I don't think Beth has fixed this one yet?
I haven't perked frost damage, but Deep Freeze sounds like a fun thing to aim for (eventually).