Still the exporters for Skyrim doesn't work so well for collisions. Collision are mode on the 3d app exported with a the model with a modifier applied to it. The problem is Skyrim have a different kind of collision meshes this time and it seems that over niftools site no one is working on a new exporters.
You can get more info here:
http://niftools.sourceforge.net/forum/viewtopic.php?f=38&t=3433&start=0