For those of you who are OCD when it comes to file organization, what are you doing to help manage your fragments and scripts? It would be nice if you could designate a separate folder for your mods scripts much like the game handles voice files, but I don’t believe that is possible. I’ve added a prefix to mine, but it doesn’t seem to add it to every fragment for some reason. Any suggestions would be great.

You can't do much about the fragments ending up in the scripts folder, but having all the others in a subfolder works fine.

http://www.gamesas.com/topic/1347738-is-there-a-better-way-to-manage-the-scripts-folder/