Mmm I had the problem as well when I was using an esb mod. But from the sound of it, it dosent sound like when u disabled the mod or took it out that u got all the files out. I would double check. A good way of doing it is to manually download it extract it to a folder and and make sure non of tje files are in ur skyrim folder.
If it was a mod from steam, ive heard that because the way things are set up u could ruin ir game with those mods if u dont know how to look for the files. Ive heard of quite a few mods corrupting games and saves from steam because the mods might not be updated and so forth.
Good luck and hope that helps. If it dosent, post over in mods and hopefully someone with more experience than I can solve ur problem.