It should be a matter of deleting a record to remove them. I've tried all of the setstage commands and I'm unable to purchase the Lakeview home until I fix this so the Jarl will sell it to me.
BTW, the quest that is holding me up is Amulet of Arkay in Whiterun. I got him his amulet back, even reset the quest and did it again and still no removing this.

Oh, you kill me. How great that would be. Can you imagine being able to return a list of items that match two keywords using a JOIN?