Smithing is the only troublesome skill, but if you use it by itself (no alchemy or enchanting loop), then it shouldn't make you overpowered. Just remember not to grind it, I found it's best to keep it equal to your main weapon skill - that way you won't run around with legendary daedric weapons at level 20.
The rest will level up naturally as you fight enemies during quests or exploration. You don't need to worry about them making you too powerful unless you're one of those people who like to spend hours sparring with horkers instead of actually playing the game
