Body mods typically use meshes/nifs and stuff...you have to delete those from the directories so they don't over-ride the defaults.
If you installed from disc, where I think all the default textures/meshes may be visible upon install (vs. Steam DL where they're not/packed in bsa's only) and you over-wrote the defaults (without backing them up first) you might have a problem.
Edit: and what Tojka said.