Well I decided to go with Stormcloaks on my play through and found myself in an odd position. Of course, I am the Thane of Whiterun and I own a house there. Now I have to storm my own city. Well before I did that, I wanted to finish the quest with the Greybeards. The Horn was stolen from the tomb, so I had to go to Riverwood, meet Delphine, then go kill the dragon at Kynesgrove. All well and good. So I go to start the Battle for Whiterun quest only to find that I have to report back to Ulfric for some reason. Turns out I waited too long, I guess, to do this quest. He said that he is disappointed that I "ran away from the battle". That's funny, I hadn't even shown up to start the battle!
The coolest thing to me about quests in TES series is that they could be done when you wanted to do them, without a time limit. Turns out this one is pretty important and I completely miss the chance to see how the battle plays out. This really svcks.
Did this happen to anyone else?