Also TES4Gekco can do it, actually it's just a matter of changin a single byte from 00 to 01 and renaming from .esp to .esm.
Technically, there's a bit more to it than that since the advent of http://i.imgur.com/VaIrx.png. Any ESM flagged plugin overriding its masters' cell children, regardless of its file extension,
should have an ONAM list in its header listing every overridden ACHR, LAND, NAVM, PGRE, PHZD, and REFR (if applicable). Version control, evidently, can create ONAM lists as can *Edit.