I use Wrye Flash to change my master file from FO3 to FO NV. Takes all of 2 seconds

Drop esp in data folder, open Wrye Flash, select plugin, go to box on the right and click the master file (Fallout3.esm), say OK to the pop up warning, click save and it's done. Master file changed to NV.
Don't know about the GECK part, though. I just use FOMM to get the form ID's of the items to give them to myself through the console ingame.