Father/Shaun claims the Institute attempted to help the settlers in Commonwealth form a government but failed.
Father: "Oh, we've tried that. Surprised? The Institute once tried to help create a stabilized Commonwealth government. It ended in bickering, infighting... it was a disaster. No, we look after our own now."
However Nick tells me a very different story;
"The Commonwealth Provisional Government. Years back a group of settlements tried to get together and form a coalition. Every settlement with even a hint of clout sent representatives to try and hash out an agreement. Only the Institute sent a representative of their own, a Synth. The man killed every rep at the talks. The Commonwealth Provisional Government was over before it even got off the ground. I took up in town not long after. I was damn lucky they didn't just tell me to scram right then and there."
If this is correct, Shaun either doesn't know himself or is feeding me a whole bunch of crap. I'm disappointed that you can't uncover or question the Institute on this and the kidnappings, synth replacements, etc.