Full Ghost/Clean hands run through, found everything, except for maxing out the money on each map. I had to replay from a certain bugged area to make sure I got those achievements, so I rushed through from there to the end without picking up runes etc.

When I checked my mission stats, it'd over written my good stats with the rushed. Is there no way to keep my best stats? It's not really an issue, but I'm going to be doing a fast, high chaos run though, so my mission stats will look terrible, I'd quite like to keep both.

Maybe keeping a backup of my profile for the game from the Steam folder?