Hmm a tough situation really, since you're the reason why he dies, and yet you didn't strike the blow.
I think it's best left up to a fellow from Arkane to give the right answer, I am however puzzled by this question too!
However in that situation, why not bend time, and shoot him with a sleep dart?(IF they are of course unlocked in that mission at all)
Then it's a no-kill for sure
