From memory the mods that I deleted are:
Midias Magic
XCE
Fixed Followers Lite
Black Sabbath Main menu music
and the one that's most likely to be causing this was a mod I made myself that changes the soul trap spell into a projectile. I am a complete newb when it comes to the CS so deleting this mod may have deleted some needed file.
I deleted the mods using the skyrim launcher. Any help would be appreciated.
Update: When I try to start a new game I get the following messages
WETrigger<(01099883)> WARNING: OnInit() MyHoldLocation property has not ben set, this will result in errors.
WETrigger<(010D13EA)> WARNING: OnInit() MyHoldLocation property has not ben set, this will result in errors.
WETrigger<(01099887)> WARNING: OnInit() MyHoldLocation property has not ben set, this will result in errors.
FIXED:
After some googling I found a solution to my problem. At first I uninstalled and reinstalled the CK with no change. I then Went into C:\
From this I gather that the errors were caused by the Steam application trying to load mods that did not exsist. I use both the steam workshop and the nexus mod manager and I think I caused this error by having the steam skyrim launcher open (while it was updating mods) and trying to open the nexus mod manager. I hope this helps anyone who has this problem in the future.
