When you have two ingredients with the same effect, they are automatically sorted when you approach the Alchemy Lab.
By eating you can discover only the first effect. The rest you'll find out by mixing random potions - when it says "unknown effect", mix it anyway. Sometimes the creation will fail, sometimes you will get a potion and new properties will be added to the list of ingredients.
Alchemy is all about trial and error (unless you use internet guides, but they really spoil the fun

)
Oh, and the perk allowing to dicover two effects instead of one when you eat is not worth taking. It reveals only the FIRST two effects, of which you already know one, and by the time you reach 50 in alchemy you'll probably know most of the second effects too.