i would personally go into the command console and try resetting your character... I cant name it off the top of my head, but i'm sure it can be found here:
http://fallout.wikia.com/wiki/Fallout_3_console_commands
It'll take you to level one, i think its the resetXP command but i'm not sure, but no big deal, just give your self the level you originally had, or whatever think you had... or whatever you think you should have had...
If its something in the game, it should fix its self upon level up.
If this fails, try making an item that permanently adds to the stats in question.