I just wanted to add for all the PC users out there, try toggling collision and going up in the air after the dragon.
Spoiler To toggle collision, hit the tilde key (open the console) and enter tcl.
I've done it a few times for fun, and the dragon acts strangely (no wing flapping at all - looks almost frozen). Relevant to the OP, when fighting dragons this way, you cannot hit them on the head, neck, wings, or underbody. You can only hit them on the top half of their body, from the base of the neck to near the end of the tail. I am wondering if this is true when shooting from the ground.