Think about it. I travel to Riften and i do not want to join the thieves Guild, why is there no opposing force i can join to take down them down.
The companions set out to destroy the Silver Hand, but why can i not join the Silver Hand
if i do not like the companions, or what they stand for.
The mages guild in Winterhold. The residents of Winterhold are always complaining about the college, so if i have no interest in magic why is there no option to join the town and rid Winterhold of there mages.
You could use this template for every faction in the game, which would not only give you more quests but also give the game much more reply value (there is alot of that already) and help with roleplaying.
Whats peoples thoughts on this.
