If you have terrible speed or acrobatics scores, you may end up taking a little longer. Given how the skill system works in Morrowind, and players' propensity to jump everywhere, it pretty common to have decent levels in both. If you have even a moderately competent acrobatics score, you can just start leaping off the tops of cantons. Almsivi Intervention will blast you straight to the other side in a second. Obviously, entering the cantons will take longer if only due to the load times involved. Actually moving around Vivec is pretty quick. I mean, it's a big city, but it's very dense. Unless you don't know where you're going, it won't take very long.
In any case, what you really seem to be complaining about is movement speed. This is a wholly separate issue from city size/design. It's weird to say you wouldn't like a city the size of Vivec in Skyrim because the movement speed in Morrowind wasn't fast enough.
In any case, what you really seem to be complaining about is movement speed. This is a wholly separate issue from city size/design. It's weird to say you wouldn't like a city the size of Vivec in Skyrim because the movement speed in Morrowind wasn't fast enough.

It takes like thirty seconds to cross from one end of Vivec to the other on foot. Less if you have a decent levitation spell.