If you really don't want to get rid of it though, you could also try making it a master level spell and greatly increase it's mana cost. Or make it sacrfice an ore to upgrade another, so you'd need 2 iron to make 1 silver and 2 silver to make 1 gold. Either would make the spell much less abusable.
Again, I like this idea, but it makes no sense with what
transmutation is. Transmutation is turning one thing into another -- an act of alchemy, of equivalent exchange. If you use two things, you get two things in this process. So 2 for 1 is nonsensical in the theoretical sense. Failing transmutations, however, is very reasonable, since alchemy is something that requires skill and practice.