I just noticed this recently. At 1st I tought it's a bug caused by RWTT mod but than the waterfalls would disappear completely. This is something else I think. When I stay close enough the waterfall it looks normal but if I go far enough it turns into a texture w/o animation. It looks ugly. Was wondering what things do I need to tweak in my SkyrimPrefs.ini to change this.
Like I said before Water does enhance them and animate them slightly, and I believe they are working on making them animate properly forgot to mention.
I use WATER on my experimental version with ugrids at 9 and the only thing I run into is tree skinning(that can be fixed just need to take the time to experiment).