You can refuse to take them.
Not if I don't know how they trigger, I can't. There are a LOT of "evil" quests that trigger from not doing anything evil at all.
Spoilers: Just off the top of my head...taking any stone of Berenziah (you don't exactly have to steal one to get it as Brynjolf suggests), talking to one of the first NPCs you come across (gives you the Aventus Arentino -> Kill Grelod questline), reading a book about Boethiah activates a quest that makes you sacrifice an innocent follower...talking to a guy in Markarth makes you wind up doing the bidding of a Daedric prince...that's just a few. There are a TON of "evil" quests opened from everday actions.
Well what svcks is having a bunch of quests in your journal and not being able to complete them do to being bugged. Great, huh?!

Oh, I have these too...damn you, Jarl Skald! This game is a good timewaster, but it's [censored] broken in a lot of aspects.