You didn't really give any details- HOW are you getting two? Is an NPC giving them to you? That would probably be a bug. But if you're in a bandit cave or dungeon and happen to find two notes, that's on purpose- it's in case you didn't see the first one.
Also, the same books are everywhere in the game, for the same reason. The game doesn't know which direction, which town, which dungeons you're gonna go to first. And what if you skipped over books the first half of the game, and suddenly decide to start reading them? It would svck if all the books were unique and you had to go back to every place you'd ever been just to find them again.