If the game glitches, attempt to talk to the Officer who is leading the group (storm cloak / imperials), if he isn't around head back to where you are to meet up with them outside, a oddity can happen where none of them are there, but the voice dialog will still play through. Also its a good idea not to go inside till after the leader makes his little speech outside the door, jumping the gun here can also lead to a glitch.
Killing off all the bandits prior to entering the crypt, even killing off all the storm cloaks / imperials standing outside of the crypt before meeting up with the group, doesn't seem to glitch the game, but advancing inside during the mission prior to meeting up with them seems to have a 50/50 chance of glitching it. If the rubble doesn't get removed there isn't any way to continue it unless you can glitch yourself through the rubble, but then, you can end up with the same problem leaving as well, as the entrance may end up still being blocked with rubble.