Yes, I have to say I have more loyalty to my morality than to my race or nationality.

That said, the way the game sets up this conflict leaves me seriously conflicted. Ulfric is hardly a noble leader, and I have a loyalty to the unity of the empire, especially in the face of outside aggression. However, this does not particularly excuse the authoritarian tactics used, and I especially will not abide by their religious discrimination, even if it was forced upon them not entirely willingly.

Conversely, the nords themselves are highly racist, and I can hardly turn a blind eye to that, as well.

Ultimately, I'm just depressed.

Talk to Scouts-Many-Marshes after you finish the Imperial Civil War quest. He will express his gratitude for defeating the Stormcloaks and removing prejudice from the city.

So yeah, if you are an Argonian, join the Imperials.

Stormcloaks. I loathe the Imperials. There the only ones I actually enjoy killing.

There's a high elf female that's new to winterhold, talk to her, and you will see he is not a bigot.