Spoiler
She didn't attack you inside Movarth's cave? I left her alive too on the first toon, but she was inside the cave, and attacked me. Then on later toons, she was in the coffin when I searched the house, and attacked immediately....
She attacks if she sees you sneaking into the house. You can get around this by either going in at night and sneaking past / killing Hroggar, or you can just sneak before entering the Cellar and grab the journal while she is in the coffin. She won't attack and leaves immediately.
Inside Morvarth's cave, she helped me kill the vampires and did not attack me. She remained in the cave hallway until I completed the quest, after which she returned to Morthal and is still visiting the Inn every night, telling Jonna about her hunger.
