Actually goodfellas was quite creepy but really funny. Something about a man as little and with as high a voice as Joe Pesci get angry and shoot someone just invokes those emotions in me.
I wouldn't say it was a creepy movie but it was damn good. One of my favorites.
Sin City comes to mind. I don't remember a thing about the plot but I recall it was pretty strange.
I also watched a bit of A Clockwork Orange and it was pretty disturbing, I never saw most of though.
Also The Fourth Kind was kind of creepy sometimes. It wasn't a good movie but it had its moments.
The Descent: Part 2
Shutter Island
I haven't seen most of what you listed but these two stick out for me so I'll just agree that these two were creepy. A lot of people I know didn't like shutter Island at all but I thought it was a great movie.
The descent 2 was alright but it doesn't compare to the first one which was all around much better.