I do not like "chosen one" stories. No matter the format. Books, shows, films, games, whatever it is, I am always turned off by the protagonist being "destined" for his fate. (Note that some of this does not apply to Skyrim, but it is often found in other "chosen one" stories.)
Give me a story about someone working her way up from nothing. GIve me someone who is not written of in prophecy, whose destiny is not found in the stars, whose victory is not assured. A hero doesn't need a special birth or lineage or powers. She doesn't need to be marked for death by the villain Because It Is Written, but because she grows to be a threat to his plans. Allies shouldn't fall in line just because someone wrote it down centuries before. What about all the people who were fighting before you were? Why do they step aside for someone seen in a crystal ball?
It is far less thrilling to be a savior when you already are one. You can't escape destiny. You can't turn away from it, say no, because it's in the script. Not only that, it makes saying "yes, I will step up, I will do this" much less exciting. You were meant to play the part all along. You had no choice. Your cards are laid out for you. Your motives don't matter. You could be doing it for power, greed, spite, boredom, freedom, et cetera, but ultimately you are doing it to Be A Hero. Trust isn't earned, it's forced.
It also makes anyone who opposes the hero into a complete idiot from the get go. Enemies and naysayers don't have a point when they argue against you. They're either with you or against you (nevermind that they could be neutral or apathetic or any number of things). You could play as one of the most evil people around, even worse than the antagonist, but it doesn't matter because you're were chosen to save, to lead. You are right, ultimately, and that is that. Your motives don't matter. Your mistakes are inconsequential. Her flaws are scrubbed, her ends justify her means. The accomplishments you make and the accomplishments of others are diminished because you are Special.
This is often found hand in hand with the villain who has no motivation. The villain is bad Because. The villain eats kittens for breakfast and children for dinner so we know that he is Evil. He is so obviously evil that his wrongness is unquestionable, and, rather boring. The antagonist should have motivations too. Good points and bad points, flaws and good qualities. Black and white makes for a limited palette, and when you are the chosen one, those are often the colors you end up with.
A hero shouldn't be special because of what she is, rather she should be special because of what she becomes.

I really love the feeling that whatever power separates me from the rest was earned or skilfully mastered.