The only huge bug I've encountered is the one where you're waiting for Hardin to take over the BOS and he never does (trust me, he never does when the glitch happens despite waiting months in game and doing dozens of side quests). If they don't patch this soon I'm gonna be pretty upset because i want to complete for the republic part II mission and continue the main quest without destroying the BOS.

Helping Hardin to take over the chapter and repairing the filtration system are intended to be mutually exclusive quests. You must pick one or the other, with Hardin's route being easier but resulting in less faction rep (the average player ending up at "accepted") and McNamara's being harder but leaving the average player at "liked." Note also that the quests following their transitions are completely different.
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However, there is a bug that allows the player to seemingly complete both options. For this error state to occur, you must tell Hardin about the "Chain that Binds" but NOT tell him about McNamara's orders to find scouts/paladins/filtration parts. The player can then turn in the filtration parts, tell McNamara you've turned in the parts, and finally tell Hardin about the orders. This is the only order of events that works, as the "Chain that Binds" dialogue options disappear from Hardin after turning in the filtration parts.
This route generates more immediate XP, but leaves the two NPCs in an error state. They will, for the rest of the game, both only tell the player to come back later. This prevents you from continuing on to the next part in the chain. (Confirmed PC,ps3)
Note that both legitimate options will result in a brief period wherein the player cannot speak to their elder of choice, but this does not mean that they're bugged - leave the cell and wait for a few days to ensure they've made the transition.
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After fixing the air filtration system, and then helping Hardin oust McNamara, you will not be able to speak to either of them forever. Hardin will keep saying he will have his hands full for a few days, and McNamara will keep on saying he must prepare a defense, but no matter how long you wait they will keep saying the same things. Killing Hardin while hidden will not make anyone hostile, but McNamara will still be unable to speak to you, and killing McNamara will cause the Brotherhood become hostile, including Hardin. This means the only way to get Power Armour Training will be from the For Auld Lang Syne quest.

I dont know if this has been mentioned but, when I was doing Wild Card: Change in Management, i snuck in the restricted area and once i killed/disabled Mr. House, and not killing any robots, Jane and Victor are gone, so I don't get 2000 caps per snowglobe And, Victor, the most awesome character in the game is gone.

Here is another minor bug for the list, i didnt see it on the list.
Sometimes taking just one chem results in you becoming addicted to it?
(And no i didnt take a similar chem a couple of hours after another, it was one turbo in one month game time)
Will keep adding bugs as i come across them, which is a becoming quite a few but it might help getting the patch out this year?

You should add to the "Still in the Dark" brotherhood quest bug. The player shouldn't be able to do both the Hardin and the McNamara quest lines, but the game somewhat allows you to do so. If you do this, both Hardin and McNamara won't talk to the player anymore, no matter how much time the player waits. From Fallout Wiki:

There's an unconfirmed solution to this bug. In http://www.gamesas.com/index.php?/topic/1138521-spoiler-alert-quest-glitch-head-paladin-hardin-becoming-new-elder/page__gopid__16737221&#entry16737221 some users stated that if you bring the companion Veronica to Hidden Valley for her quest "I Could Make You Care" (to let her speak to McNamara), after her dialogue with the Elder he will talk to you again, somewhat "fixing" the bug. This is uncofirmed because I'm trying this "solution", but after the first dialogue between Veronica and McNamara nothing's changed – in my game. I will see if the second dialogue between the companion and the elder will "fix" the bug.
I hope these are useful info.